Here is link to video of my recent keynote at the 2011 Design Automation Conference that summarizes the most recent progress.
Dark Silicon
Recently, Hadi Esmaeilzadeh, Emily Blem, Renée St. Amant, Karthikeyan Sankaralingam, and Doug Burger, published a paper entitled "Dark Silicon and the End of Multicore Scaling". Here is the associated article in New York Times that beautifully summarizes the issue:
"The problem is not that they cannot squeeze more transistors onto the chips — they surely can — but instead, like a city that cannot provide electricity for its entire streetlight system, that all those transistors could require too much power to run economically. They could overheat, too."
Communications of the ACM

The August 2011 issue of the Communications of the ACM published our paper on Cognitive Computing.
Authors:
Dharmendra S. Modha
Rajagopal Ananthanarayanan
Steven K. Esser
Anthony Ndirango
Anthony J. Sherbondy
Raghavendra Singh
Abstract:
Unite neuroscience, supercomputing, and nanotechnology to discover, demonstrate, and deliver the brain’s core algorithms.
Neural network computation with DNA strand displacement cascades
Today, Lulu Qian, Erik Winfree & Jehoshua Bruck published an interesting paper in Nature.
Abstract: The impressive capabilities of the mammalian brain—ranging from perception, pattern recognition and memory formation to decision making and motor activity control—have inspired their re-creation in a wide range of artificial intelligence systems for applications such as face recognition, anomaly detection, medical diagnosis and robotic vehicle control. Yet before neuron-based brains evolved, complex biomolecular circuits provided individual cells with the ‘intelligent’ behaviour required for survival. However, the study of how molecules can ‘think’ has not produced an equal variety of computational models and applications of artificial chemical systems. Although biomolecular systems have been hypothesized to carry out neural-network-like computations in vivo and the synthesis of artificial chemical analogues has been proposed theoretically experimental work has so far fallen short of fully implementing even a single neuron. Here, building on the richness of DNA computing and strand displacement circuitry, we show how molecular systems can exhibit autonomous brain-like behaviours. Using a simple DNA gate architecture that allows experimental scale-up of multilayer digital circuits, we systematically transform arbitrary linear threshold circuits (an artificial neural network model) into DNA strand displacement cascades that function as small neural networks. Our approach even allows us to implement a Hopfield associative memory with four fully connected artificial neurons that, after training in silico, remembers four single-stranded DNA patterns and recalls the most similar one when presented with an incomplete pattern. Our results suggest that DNA strand displacement cascades could be used to endow autonomous chemical systems with the capability of recognizing patterns of molecular events, making decisions and responding to the environment.
Early Tagging of Cortical Networks Is Required for the Formation of Enduring Associative Memory
I read a thought-provoking article in Science (18 Feb 2011) by Edith Lesburguères, Oliviero L. Gobbo, Stéphanie Alaux-Cantin, Anne Hambucken, Pierre Trifilieff, and Bruno Bontempi.
Abstract: Although formation and stabilization of long-lasting associative memories are thought to require time-dependent coordinated hippocampal-cortical interactions, the underlying mechanisms remain unclear. Here, we present evidence that neurons in the rat cortex must undergo a “tagging process” upon encoding to ensure the progressive hippocampal-driven rewiring of cortical networks that support remote memory storage. This process was AMPA- and N-methyl-D-aspartate receptor–dependent, information-specific, and capable of modulating remote memory persistence by affecting the temporal dynamics of hippocampal-cortical interactions. Post-learning reinforcement of the tagging process via time-limited epigenetic modifications resulted in improved remote memory retrieval. Thus, early tagging of cortical networks is a crucial neurobiological process for remote memory formation whose functional properties fit the requirements imposed by the extended time scale of systems-level memory consolidation.